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Data and scripts associated with “Drying and rewetting of riverbed sediments results in cold to neutral biogeochemical moments”

Identification

Public canonical key
radar:r-83824e3607e15e0b9cdbdbf8ef230b4b
Authors
Garayburu-Caruso, Vanessa A. · Laan, Maggi · Coulson, Laura E. · Delgado, Dillman · Forbes, Brieanne · Goldman, Amy E. · McKever, Sophia A. · Renteria, Lupita · Rod, Kenton A. · Veach, Allison · Vergara, Mariana · Stegen, James C.
Reported year
2026
Reported language
und
Source type
Dataset
First detected
2026-11-13T15:29:09.944670+00:00
Last metadata observation
2026-11-13T15:29:09.944670+00:00
Last HTTP verification
Not checked

Institutions reported by the source

Pacific Northwest National Laboratory · University of Vienna · University of Texas at San Antonio

Documentary abstract — original language

This data package is associated with the publication “Drying and rewetting of riverbed sediments results in cold to neutral biogeochemical moments” accepted to Nature Communications Earth and Environment (Garayburu-Caruso et al., 2025; preprint: https://doi.org/10.21203/rs.3.rs-6711373/v1). The analyses draw on three source data packages published through the Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE). The continental United States laboratory moisture-manipulation package (Laan et al., 2024; DOI 10.15485/2428003) provides oxygen-consumption time series and post-incubation sediment and water geochemistry. The WHONDRS (Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems) machine-learning-informed continental United States field package (Forbes et al., 2023; DOI 10.15485/1923689; version 4 used in this analysis) provides field metadata, sediment grain-size measurements, and geospatial context. The San Antonio, Texas moisture-manipulation package (Laan et al., 2025; DOI 10.15485/2569752) provides 26 additional samples used in the expanded effect-size analysis. Raw files from these source packages are not duplicated here. The package contains processed data, derived variables, figures, and R scripts used to evaluate how 21-day drying and rewetting influenced riverbed-sediment oxygen consumption across streams and rivers in the contiguous United States. Data used in the analyses include oxygen-consumption rates and treatment effect sizes, sediment grain size and D50, gravimetric moisture, ATP, total organic carbon, total nitrogen, Fe(II), dissolved organic carbon/nitrogen measurements, specific conductance, pH, temperature, and field/geospatial metadata. The package supports reproduction of the manuscript analyses and figures and provides inputs for comparative studies of variable inundation and sediment biogeochemistry. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. At the directory level, the associated repository is organized primarily into Data, Figures, and Scripts folders, with several top-level analysis/output files. The Data folder contains manuscript analysis inputs and derived tables; the Figures folder contains manuscript and supplementary figure outputs; and the Scripts folder contains R scripts for D50 calculations, effect-size summaries, LASSO (Least Absolute Shrinkage and Selection Operator) regression, random-forest/SHAP (SHapley Additive exPlanations) analyses, and figure generation. In addition to this readme, this data package also includes a file-level metadata (FLMD) file that describes each file and a data dictionary (DD) that describes all column/row headers and variable definitions. This data package is associated with the ECA_Physical_Manuscript repository found at https://github.com/WHONDRS-Hub/ECA_Physical_Manuscript. File are .Rproj, .csv, or .md.

Identifiers

DOI
10.15485/3422709
OSTI_ID
3422709

Documentary context

Documentary family
dataset
Source-reported types
Dataset
Publishers
River Corridor Hydro-biogeochemistry from Molecular to Multi-Basin Scales SFA

Entity mentions are not evidence of legal recognition. Jurisdiction studied is separate from author affiliation country.

Sources

DataCite · Record 1

Cite this reference

Garayburu-Caruso, Vanessa A.; Laan, Maggi; Coulson, Laura E.; Delgado, Dillman; Forbes, Brieanne; Goldman, Amy E.; McKever, Sophia A.; Renteria, Lupita; Rod, Kenton A.; Veach, Allison; Vergara, Mariana; Stegen, James C.. Data and scripts associated with “Drying and rewetting of riverbed sediments results in cold to neutral biogeochemical moments”. 2026. https://doi.org/10.15485/3422709

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APA
Garayburu-Caruso, Vanessa A.; Laan, Maggi; Coulson, Laura E.; Delgado, Dillman; Forbes, Brieanne; Goldman, Amy E.; McKever, Sophia A.; Renteria, Lupita; Rod, Kenton A.; Veach, Allison; Vergara, Mariana; Stegen, James C.. (2026). Data and scripts associated with “Drying and rewetting of riverbed sediments results in cold to neutral biogeochemical moments”. https://doi.org/10.15485/3422709
Chicago
Garayburu-Caruso, Vanessa A.; Laan, Maggi; Coulson, Laura E.; Delgado, Dillman; Forbes, Brieanne; Goldman, Amy E.; McKever, Sophia A.; Renteria, Lupita; Rod, Kenton A.; Veach, Allison; Vergara, Mariana; Stegen, James C.. Data and scripts associated with “Drying and rewetting of riverbed sediments results in cold to neutral biogeochemical moments”. 2026. https://doi.org/10.15485/3422709
ISO 690
Garayburu-Caruso, Vanessa A.; Laan, Maggi; Coulson, Laura E.; Delgado, Dillman; Forbes, Brieanne; Goldman, Amy E.; McKever, Sophia A.; Renteria, Lupita; Rod, Kenton A.; Veach, Allison; Vergara, Mariana; Stegen, James C.. Data and scripts associated with “Drying and rewetting of riverbed sediments results in cold to neutral biogeochemical moments”. 2026. https://doi.org/10.15485/3422709

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UDTR Global Rights of Nature Legal Library. Data and scripts associated with “Drying and rewetting of riverbed sediments results in cold to neutral biogeochemical moments”. Documentary record: https://www.declarationuniverselledesdroitsdelarbre.org/global-rights-of-nature-radar/reference/r-83824e3607e15e0b9cdbdbf8ef230b4b/ · Last HTTP verification: not performed

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Source roles

Bibliographic / original publication source · https://www.osti.gov/servlets/purl/3422709

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Documentary status

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