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The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

Identification

Public canonical key
doi:10.1038/ncomms4930
Authors
Shengyi Liu · Yumei Liu · Xinhua Yang · Chaobo Tong · David Edwards · Isobel A. P. Parkin · Meixia Zhao · Jianxin Ma · Jingyin Yu · Shunmou Huang · Xiyin Wang · Junyi Wang · Kun Lu · Zhiyuan Fang · Ian Bancroft · Tae‐Jin Yang · Qiong Hu · Xinfa Wang · Zhen Yue · Haojie Li · Linfeng Yang · Jian Wu · Qing Zhou · Wanxin Wang · Graham J.W. King · J. Chris Pires · Changxin Lu · Zhangyan Wu · Sampath Perumal · Zhuo Wang · Hui Guo · Shengkai Pan · Limei Yang · Jiumeng Min · Dong Zhang · Dianchuan Jin · Wanshun Li · Harry Belcram · Jinxing Tu · Mei Guan · QI Cun-kou · Dezhi Du · Jiana Li · Liangcai Jiang · Jacqueline Batley · Andrew Sharpe · Beom‐Seok Park · Pradeep Ruperao · Feng Cheng · Nomar Espinosa Waminal · Yin Huang · Caihua Dong · Li Wang · Jingping Li · Zhiyong Hu · Mu Zhuang · Yi Huang · Junyan Huang · Jiaqin Shi · Desheng Mei · Jing Liu · Tae‐Ho Lee · Jinpeng Wang · Huizhe Jin · Zaiyun Li · Xun Li · Jiefu Zhang · Lu Xiao · Yongming Zhou · Zhongsong Liu · Xuequn Liu · Rui Qin · Xu Dong Tang · Wenbin Liu · Yupeng Wang · Yangyong Zhang · Jonghoon Lee · Hyun Hee Kim · France Denœud · Xun Xu · Xinming Liang · Wei Hua · Xiaowu Wang · Jun Wang · Boulos Chalhoub · Andrew H. Paterson
Reported year
2014
Reported language
en
Source type
article
First detected
2026-11-09T19:04:47.851719+00:00
Last metadata observation
2026-11-09T19:04:47.851719+00:00
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Institutions reported by the source

Agriculture and Agri-Food Canada · Australian Centre for Plant Functional Genomics · Australian Research Council · BGI Genomics · BGI Group (China) · Centre National de la Recherche Scientifique · Chinese Academy of Agricultural Sciences · Commissariat à l'Énergie Atomique et aux Énergies Alternatives · Genoscope · Génomique Métabolique du Genoscope · Huazhong Agricultural University · Hunan Agricultural University · Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · Institut National de la Recherche Agronomique · Institute of Vegetables and Flowers · Jiangsu Academy of Agricultural Sciences · Key Laboratory of Biology and Genetic Improvement of Horticultural Crops · King Abdulaziz University · National Academy of Agricultural Science · National Research Council Canada · North China University of Science and Technology · Oil Crops Research Institute · Purdue University West Lafayette · Rural Development Administration · Sahmyook University · Seoul National University · Sichuan Academy of Agricultural Sciences · South Central Minzu University · Southern Cross University · Southwest University · The University of Queensland · University of Copenhagen · University of Georgia · University of Hong Kong · University of Missouri · University of York · Université d'Évry Val-d'Essonne

Reported affiliation countries

AU · CA · CN · DK · FR · GB · HK · KR · SA · US

Documentary abstract — original language

Polyploidization has provided much genetic variation for plant adaptive evolution, but the mechanisms by which the molecular evolution of polyploid genomes establishes genetic architecture underlying species differentiation are unclear. Brassica is an ideal model to increase knowledge of polyploid evolution. Here we describe a draft genome sequence of Brassica oleracea, comparing it with that of its sister species B. rapa to reveal numerous chromosome rearrangements and asymmetrical gene loss in duplicated genomic blocks, asymmetrical amplification of transposable elements, differential gene co-retention for specific pathways and variation in gene expression, including alternative splicing, among a large number of paralogous and orthologous genes. Genes related to the production of anticancer phytochemicals and morphological variations illustrate consequences of genome duplication and gene divergence, imparting biochemical and morphological variation to B. oleracea. This study provides insights into Brassica genome evolution and will underpin research into the many important crops in this genus. Brassica oleracea is plant species comprising economically important vegetable crops. Here, the authors report the draft genome sequence of B. oleracea and, through a comparative analysis with the closely related B. rapa, reveal insights into Brassicaevolution and divergence of interspecific genomes and intraspecific subgenomes.

Identifiers

DOI
10.1038/ncomms4930
OPENALEX
W1991552254

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Cite this reference

Shengyi Liu; Yumei Liu; Xinhua Yang; Chaobo Tong; David Edwards; Isobel A. P. Parkin; Meixia Zhao; Jianxin Ma; Jingyin Yu; Shunmou Huang; Xiyin Wang; Junyi Wang; Kun Lu; Zhiyuan Fang; Ian Bancroft; Tae‐Jin Yang; Qiong Hu; Xinfa Wang; Zhen Yue; Haojie Li; Linfeng Yang; Jian Wu; Qing Zhou; Wanxin Wang; Graham J.W. King; J. Chris Pires; Changxin Lu; Zhangyan Wu; Sampath Perumal; Zhuo Wang; Hui Guo; Shengkai Pan; Limei Yang; Jiumeng Min; Dong Zhang; Dianchuan Jin; Wanshun Li; Harry Belcram; Jinxing Tu; Mei Guan; QI Cun-kou; Dezhi Du; Jiana Li; Liangcai Jiang; Jacqueline Batley; Andrew Sharpe; Beom‐Seok Park; Pradeep Ruperao; Feng Cheng; Nomar Espinosa Waminal; Yin Huang; Caihua Dong; Li Wang; Jingping Li; Zhiyong Hu; Mu Zhuang; Yi Huang; Junyan Huang; Jiaqin Shi; Desheng Mei; Jing Liu; Tae‐Ho Lee; Jinpeng Wang; Huizhe Jin; Zaiyun Li; Xun Li; Jiefu Zhang; Lu Xiao; Yongming Zhou; Zhongsong Liu; Xuequn Liu; Rui Qin; Xu Dong Tang; Wenbin Liu; Yupeng Wang; Yangyong Zhang; Jonghoon Lee; Hyun Hee Kim; France Denœud; Xun Xu; Xinming Liang; Wei Hua; Xiaowu Wang; Jun Wang; Boulos Chalhoub; Andrew H. Paterson. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. 2014. https://doi.org/10.1038/ncomms4930

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APA
Shengyi Liu; Yumei Liu; Xinhua Yang; Chaobo Tong; David Edwards; Isobel A. P. Parkin; Meixia Zhao; Jianxin Ma; Jingyin Yu; Shunmou Huang; Xiyin Wang; Junyi Wang; Kun Lu; Zhiyuan Fang; Ian Bancroft; Tae‐Jin Yang; Qiong Hu; Xinfa Wang; Zhen Yue; Haojie Li; Linfeng Yang; Jian Wu; Qing Zhou; Wanxin Wang; Graham J.W. King; J. Chris Pires; Changxin Lu; Zhangyan Wu; Sampath Perumal; Zhuo Wang; Hui Guo; Shengkai Pan; Limei Yang; Jiumeng Min; Dong Zhang; Dianchuan Jin; Wanshun Li; Harry Belcram; Jinxing Tu; Mei Guan; QI Cun-kou; Dezhi Du; Jiana Li; Liangcai Jiang; Jacqueline Batley; Andrew Sharpe; Beom‐Seok Park; Pradeep Ruperao; Feng Cheng; Nomar Espinosa Waminal; Yin Huang; Caihua Dong; Li Wang; Jingping Li; Zhiyong Hu; Mu Zhuang; Yi Huang; Junyan Huang; Jiaqin Shi; Desheng Mei; Jing Liu; Tae‐Ho Lee; Jinpeng Wang; Huizhe Jin; Zaiyun Li; Xun Li; Jiefu Zhang; Lu Xiao; Yongming Zhou; Zhongsong Liu; Xuequn Liu; Rui Qin; Xu Dong Tang; Wenbin Liu; Yupeng Wang; Yangyong Zhang; Jonghoon Lee; Hyun Hee Kim; France Denœud; Xun Xu; Xinming Liang; Wei Hua; Xiaowu Wang; Jun Wang; Boulos Chalhoub; Andrew H. Paterson. (2014). The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. https://doi.org/10.1038/ncomms4930
Chicago
Shengyi Liu; Yumei Liu; Xinhua Yang; Chaobo Tong; David Edwards; Isobel A. P. Parkin; Meixia Zhao; Jianxin Ma; Jingyin Yu; Shunmou Huang; Xiyin Wang; Junyi Wang; Kun Lu; Zhiyuan Fang; Ian Bancroft; Tae‐Jin Yang; Qiong Hu; Xinfa Wang; Zhen Yue; Haojie Li; Linfeng Yang; Jian Wu; Qing Zhou; Wanxin Wang; Graham J.W. King; J. Chris Pires; Changxin Lu; Zhangyan Wu; Sampath Perumal; Zhuo Wang; Hui Guo; Shengkai Pan; Limei Yang; Jiumeng Min; Dong Zhang; Dianchuan Jin; Wanshun Li; Harry Belcram; Jinxing Tu; Mei Guan; QI Cun-kou; Dezhi Du; Jiana Li; Liangcai Jiang; Jacqueline Batley; Andrew Sharpe; Beom‐Seok Park; Pradeep Ruperao; Feng Cheng; Nomar Espinosa Waminal; Yin Huang; Caihua Dong; Li Wang; Jingping Li; Zhiyong Hu; Mu Zhuang; Yi Huang; Junyan Huang; Jiaqin Shi; Desheng Mei; Jing Liu; Tae‐Ho Lee; Jinpeng Wang; Huizhe Jin; Zaiyun Li; Xun Li; Jiefu Zhang; Lu Xiao; Yongming Zhou; Zhongsong Liu; Xuequn Liu; Rui Qin; Xu Dong Tang; Wenbin Liu; Yupeng Wang; Yangyong Zhang; Jonghoon Lee; Hyun Hee Kim; France Denœud; Xun Xu; Xinming Liang; Wei Hua; Xiaowu Wang; Jun Wang; Boulos Chalhoub; Andrew H. Paterson. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. 2014. https://doi.org/10.1038/ncomms4930
ISO 690
Shengyi Liu; Yumei Liu; Xinhua Yang; Chaobo Tong; David Edwards; Isobel A. P. Parkin; Meixia Zhao; Jianxin Ma; Jingyin Yu; Shunmou Huang; Xiyin Wang; Junyi Wang; Kun Lu; Zhiyuan Fang; Ian Bancroft; Tae‐Jin Yang; Qiong Hu; Xinfa Wang; Zhen Yue; Haojie Li; Linfeng Yang; Jian Wu; Qing Zhou; Wanxin Wang; Graham J.W. King; J. Chris Pires; Changxin Lu; Zhangyan Wu; Sampath Perumal; Zhuo Wang; Hui Guo; Shengkai Pan; Limei Yang; Jiumeng Min; Dong Zhang; Dianchuan Jin; Wanshun Li; Harry Belcram; Jinxing Tu; Mei Guan; QI Cun-kou; Dezhi Du; Jiana Li; Liangcai Jiang; Jacqueline Batley; Andrew Sharpe; Beom‐Seok Park; Pradeep Ruperao; Feng Cheng; Nomar Espinosa Waminal; Yin Huang; Caihua Dong; Li Wang; Jingping Li; Zhiyong Hu; Mu Zhuang; Yi Huang; Junyan Huang; Jiaqin Shi; Desheng Mei; Jing Liu; Tae‐Ho Lee; Jinpeng Wang; Huizhe Jin; Zaiyun Li; Xun Li; Jiefu Zhang; Lu Xiao; Yongming Zhou; Zhongsong Liu; Xuequn Liu; Rui Qin; Xu Dong Tang; Wenbin Liu; Yupeng Wang; Yangyong Zhang; Jonghoon Lee; Hyun Hee Kim; France Denœud; Xun Xu; Xinming Liang; Wei Hua; Xiaowu Wang; Jun Wang; Boulos Chalhoub; Andrew H. Paterson. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. 2014. https://doi.org/10.1038/ncomms4930

UDTR Global Rights of Nature Legal Library. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Documentary record: https://www.declarationuniverselledesdroitsdelarbre.org/global-rights-of-nature-radar/reference/r-7f275a90879fad816ffc19a5c688ff3b/ · Last HTTP verification: not performed

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Title
OpenAlex · source · 2026-11-09T19:04:47.851719+00:00
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OpenAlex · source · 2026-11-09T19:04:47.851719+00:00
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OpenAlex · source · 2026-11-09T19:04:47.851719+00:00
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Research dossiers and documentary relations

Agriculture and Agri-Food Canada

Australian Centre for Plant Functional Genomics

Australian Research Council

BGI Genomics

BGI Group (China)

Centre National de la Recherche Scientifique

Chinese Academy of Agricultural Sciences

Commissariat à l'Énergie Atomique et aux Énergies Alternatives

Genoscope

Génomique Métabolique du Genoscope

Huazhong Agricultural University

Hunan Agricultural University

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Discovery source · https://doi.org/10.1038/ncomms4930

Discovery source · https://openalex.org/W1991552254

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